Conventional Molecular and Novel Structural Mechanistic Insights into Orderly Organelle Interactions

doi:10.1007/s40242-021-1191-6

Abstract

Abstract: The orderly organelle interaction network is prerequisite for normal life activity of cell, ensuring a balance between communication and uniqueness of organelles. Disorder organelle interaction is implicated in the occurrence and development of many diseases. An in-depth understanding of mechanisms of orderly organelle interaction helps to reveal the pathogenesis of related diseases. Chemical and genetic tools have identified the roles of specific proteins in orderly organelle interaction; however, little is known about the modes, functions and mechanisms of orderly interaction between organelles. With rapid development of imaging tools, deep-going insights into the structure feature of cell membranes have substantially improved our understanding of the mechanisms of ordered organelle interactions. This review summarizes the conventional molecular mechanism of orderly organelle interactions, and highlights the new progress regarding membrane structure and the novel structural mechanism of orderly organelle transport.

Key words: Orderly organelle interaction, Molecular mechanism, Cell membranes structure, Structural mechanism

XU Haijiao, WANG Hongda. Conventional Molecular and Novel Structural Mechanistic Insights into Orderly Organelle Interactions[J]. Chemical Research in Chinese Universities, 2021, 37(4): 829-839.

References

[1] Budin I., Szostak J. W., Ann. Rev. Biophys., 2010, 39, 245
[2] Revathi C. J., Chattopadhyay A., Srinivas U. K., Biochem. Mol. Biol. Int., 1994, 32, 941
[3] Voeltz G. K., Rolls M. M., Rapoport T. A., EMBO Reports, 2002, 3, 944
[4] Polishchuk R. S., Mironov A. A., Cell Mol. Life S., 2004, 61, 146
[5] Picard M., Taivassalo T., Gouspillou G., Hepple R. T., J. Physiol., 2011, 589, 4413
[6] Luzio J. P., Pryor P. R., Bright N. A., Nat. Rev. Mol. Cell. Biol., 2007, 8, 622
[7] Marsh M., Griffiths G., Dean G. E., Mellman I., Helenius A., Proc. Natl. Acad. Sci. USA, 1986, 83, 2899
[8] Kirby T. J., Lammerding J., Nat. Cell. Biol, 2018, 20, 373
[9] Wanders R., Ferdinandusse S., Brites P., Kemp S., BBA-Mol. Cell Biol. L., 2010, 1801, 272
[10] Prinz W. A., J. Cell Biol., 2014, 205, 759
[11] Friedman J. R., Voeltz G. K., Trends Cell Biol., 2011, 21, 709
[12] Boni Fa Cino J. S., Neefjes J., Curr. Opin. Cell Biol., 2017, 47, 1
[13] Dakik P., Titorenko V. I., Front. Genet., 2016, 7, 177
[14] Schrader M., Godinho L. F., Costello J. L., Islinger M., Front. Cell Dev. Biol., 2015, 3, 56
[15] Friedman J. R., Voeltz G. K., Trends Cell Biol., 2011, 21, 709
[16] Phillips M. J., Voeltz G. K., Nat. Rev. Mol. Cell Biol., 2015, 17, 69
[17] Peretti D., Mol. Biol. Cell, 2008, 19, 3871
[18] Matteis M. A. D., Rega L. R., Curr. Opin. Cell Biol., 2015, 35, 43
[19] Friedman J. R., Lackner L. L., West M., Dibenedetto J. R., Nunnari J., Voeltz G. K., Science, 2011, 334, 358
[20] Rowland A. A., Chitwood P. J., Phillips M. J., Voeltz G. K., Cell, 2014, 159, 1027
[21] Jani R. A., Setty S. R. G., Resonance, 2014, 19, 421
[22] Ivanov A. I., Methods in Molecular Biology, 2008, 440, 1
[23] Bonifacino J. S., Glick B. S., Cell, 2004, 116, 153
[24] Antonescu C. N., Mcgraw T. E., Klip A., Cold Spring Harb. Perspect. Biol., 2014, 6, a016964
[25] Villase O. R., Kalaidzidis Y., Zerial M., Curr. Opin. Cell Biol., 2016, 39, 53
[26] Sandri C., Serini G., Caccavari F., Val De Mbri D., Camillo C., Veltel S., Santambrogio M., Lanzetti L., Bussolino F. D. N., Ivaska J., Cell Research, 2012, 22, 1479
[27] Tang B. L., J. Cell Physiol., 2015, 231, 1417
[28] Soria F. N., Olatz P., Mathieu B., Meissner W. G., Erwan B., Benjamin D., Front. Neurosci., 2017, 11, 26
[29] Singer J. H., Lassová L., Vardi N., Diamond J. S., Nat. Neurosci., 2004, 7, 826
[30] Lawrence J. T. R., Birnbaum M. J., Proc. Natl. Acad. Sci. USA, 2003, 100, 13320
[31] Tapia D., Jimenez T., Zamora C., Espinoza J., Rizzo R., Gonzalez-Cardenas A., Fuentes D., Hernandez S., Cavieres V. A., Soza A., Guzman F., Arriagada G., Yuseff M. I., Mardones G. A., Burgos P. V., Luini A., Gonzalez A., Cancino J., Nat. Commun., 2019, 10, 17
[32] Zhang X. Y., Wang Y. Z., Front. Cell Dev. Biol., 2016, 3, 84
[33] Chan D. C., Cell, 2006, 125, 1241
[34] De Luca A., Carotenuto A., Rachiglio A., Gallo M., Maiello M. R., Aldinucci D., Pinto A., Normanno N., J. Cell Physiol., 2008, 214, 559
[35] Al-Akhrass H., Naves T., Vincent F., Magnaudeix A., Durand K., Bertin F., Melloni B., Jauberteau M. O., Lalloué F., Nat. Commun, 2017, 8, 1182
[36] Wang P. P., Kou D. Q., Le W. D., Front. Mol. Neurosci., 2020, 13, 42
[37] Liu J. Y., Huang Y., Li T., Jiang Z., Zeng L. W., Hu Z. P., Int. J. Mol. Med., 2021, 47, 38
[38] Rafelski S. M., Marshall W. F., Nat. Rev. Mol. Cell Biol., 2008, 9, 593
[39] Bornens M., Nat. Rev. Mol. Cell Biol., 2008, 9, 874
[40] Takamori S., Holt M., Stenius K., Lemke E. A., Jahn R., Cell, 2006, 127, 831
[41] Guo Y., Li D., Zhang S., Yang Y., Liu J. J., Wang X., Liu C., Milkie D. E., Moore R. P., Tulu U. S., Kiehart D. P., Hu J. J., Lippincott-Schwartz J., Betzig E., Li D., Cell, 2018, 175, 1430
[42] Valm A. M., Cohen S., Legant W. R., Melunis J., Hershberg U., Wait E., Cohen A. R., Davidson M. W., Betzig E., Lippincottschwartz J., Nature, 2017, 546, 162
[43] Wu H. X., Carvalho P., Voeltz G. K., Science, 2018, 361, eaan5835
[44] Csordas G., Renken C., Varnai P., Walter L., Weaver D., Buttle K. F., Balla T., Mannella C. A., Hajnoczky G., J Neurochem., 2008, 104, 915
[45] Helle S. C., Kanfer G., Kolar K., Lang A., Michel A. H., Kornmann B., Biochim. Biophys. Acta, 2013, 1833, 2526
[46] Kirchhausen T., Nat. Rev. Mol. Cell Biol., 2000, 1, 187
[47] Bonifacino J., Nat. Rev. Mol. Cell Biol., 2003, 4, 409
[48] Wandinger-Ness A., Zerial M., Cold Spring Harb. Perspect. Biol., 2014, 6, a022616
[49] Stenmark H., Nat. Rev. Mol. Cell Biol., 2009, 10, 513
[50] Zhen Y., Stenmark H., J. Cell Sci., 2015, 3171
[51] Zerial M., Mcbride H., Nat. Rev. Mol. Cell Biol., 2001, 2, 107
[52] Pfeffer S. R., Curr. Opin. Cell Biol., 2013, 25, 414
[53] Eathiraj S., Pan X., Ritacco C., Lambright D. G., Nature, 2005, 436, 415
[54] Mallik R., Gross S. P., Current Biology, 2004, 14, R971
[55] Wei G., Roth D., Walch-Solimena C., Novick P., Embo Journal, 2014, 18, 1071
[56] Bhuin T., Roy J. K., Exp. Cell Res., 2014, 328, 1
[57] Grosshans B. L., Ortiz D., Novick P., Proc. Natl. Acad. Sci. USA, 2006, 103, 11821
[58] Rothman J. E., Angew. Chem. Int. Ed., 2014, 53, 12676
[59] Scheller R. H., Nat. Med, 2013, 19, 1232
[60] Jahn R., Scheller R. H., Nat. Rev. Mol. Cell Biol., 2006, 7, 631
[61] Sascha M., Mcmahon H. T., Nat. Rev. Mol. Cell Biol., 2008, 9, 543
[62] Waters M. G., Hughson F. M., Traffic, 2000, 1, 588
[63] Chen Y. A., Scheller R. H., Nat. Rev. Mol. Cell Biol., 2001, 2, 98
[64] Willett R., Kudlyk T., Pokrovskaya I., Schönherr R., Ungar D., Duden R., Lupashin V., Nat. Commun., 2013, 4, 1553
[65] Simons K., Gruenberg J., Trends Cell Biol., 2000, 10, 459
[66] Vitale G., Rybin V., Christoforidis S., Thornqvist P., Mccaffrey M., Stenmark H., Zerial M., Embo Journal, 2014, 17, 1941
[67] Mukherjee S., Maxfield F. R., Traffic, 2010, 1, 203
[68] Singer S. J., Nicolson G. L., Science, 1972, 175, 720
[69] Goi F. M., Biochim. Biophys. Acta Biomembr., 2014, 1838, 1467
[70] Engelman D. M., Nature, 2005, 438, 578
[71] Takamori S., Holt M., Stenius K., Lemke E. A., Gronborg M., Riedel D., Urlaub H., Schenck S., Brugger B., Ringler P., Muller S. A., Rammner B., Grater F., Hub J. S., De Groot B. L., Mieskes G., Moriyama Y., Klingauf J., Grubmuller H., Heuser J., Wieland F., Jahn R., Cell, 2006, 127, 831
[72] Simons K., Ikonen E., Nature, 1997, 387, 569
[73] Lingwood D., Simon S. K., Science, 2010, 327, 46
[74] Dong M., Husale S., Sahin O., Nature Nanotech, 2009, 4, 514
[75] Martel-Estrada S. A., Martinez-Perez C. A., Chacon-Nava J. G., Garcia-Casillas P. E., Olivas-Armendariz I., Mater. Lett., 2011, 65, 137
[76] Lu H., P., Chem. Soc. Rev., 2014, 43, 1118
[77] Wang H. D., Hao X., Shan Y. P., Jiang J. G., Cai M. J., Shang X., Ultramicroscopy, 2010, 110, 305
[78] Simons K., Toomre D., Nat. Rev. Mol. Cell Biol., 2001, 1, 31
[79] Raposo G., Stoorvogel W., J. Cell Biol., 2013, 200, 373
[80] Gibson J., Ellory C., Browning J., Robinson H., Comp. Biochem. Phys. A, 2007, 146, S161
[81] Zhao W. D., Tian Y. M., Cai M. J., Wang F., Wu J. Z., Gao J., Liu S. H., Jiang J. G., Jiang S. B., Wang H. D., PLoS One, 2014, 9, 13
[82] Xu H. J., Su W. H., Cai M. J., Jiang J. G., Zeng X. L., Wang H. D., PLoS One, 2013, 8, e61596
[83] Tian Y. M., Li J. H., Cai M. J., Zhao W. D., Xu H. J., Liu Y., Wang H. D., RSC Adv., 2013, 3, 708
[84] Nakano A., Cell Structure and Function, 2002, 27, 349
[85] Südhof T. C., Rothman J. E., Science, 2009, 323, 474
[86] Fesce R., Meldolesi J., Nat. Cell. Biol., 1999, 1, E3
[87] Shan Y. P., Wang H. D., Chem. Soc. Rev., 2015, 44, 3617
[88] Sorkin A., Lai K. G., Exp. Cell Res., 2008, 314, 3093
[89] Atkinson C. E., Mattheyses A. L., Simon S. M., Biophysical Journal, 2010, 98, 439a
[90] Xu H. J., Gao J., Cai M. J., Chen J. L., Zhang Q. R., Li H. R., Wang H. D., Anal. Chem., 2020, 92, 6555
[91] Bonifacino J. S., Rojas R., Nat. Rev. Mol. Cell Biol., 2006, 7, 568
[92] Progida C., Bakke O., J. Cell Sci., 2016, 129, 3971
[93] Patterson G. H., Koret H., Polishchuk R. S., Daniel G., Phair R. D., Jennifer L. S., Cell, 2008, 133, 1055
[94] Zhou L. L., Gao J., Wang H. L., Shi Y., Wang H. J., Yan Q. Y., Jing Y. Y., Jiang J. G., Cai M. J., Wang H. D., Nanoscale, 2020, 12, 9950
[95] Martinez-Sanchez A., Kochovski Z., Laugks U., Zum Alten Borgloh J. M., Chakraborty S., Pfeffer S., Baumeister W., Lučić V., Nat. Methods, 2020, 17, 209
[96] Fischer T. D., Dash P. K., Liu J., Waxham M. N., PLoS Biology, 2018, 16, e2006169
[97] Tao C. L., Liu Y. T., Zhou Z. H., Lau P. M., Bi G. Q., Front. Neuroanat, 2018, 12, 48
[98] Zhang Y., Schroeder L. K., Lessard M. D., Kidd P., Chung J., Song Y., Benedetti L., Li Y., Ries J., Grimm J. B., Nat. Methods, 2020, 17, 225