Rapid Prediction of Interaction Energies for Nucleoside-containing Hydrogen-bonded Complexes: Lone-pair Dipole Moment Treatment for Adenine, Cytosine and Guanine

doi:10.1007/s40242-017-6295-7

Abstract

Abstract:

In this paper, the polarizable dipole-dipole interaction model was further developed via adding lone-pair dipole moment treatment for nucleobase adenine, cytosine, and guanine. Not only polar covalent bonds, such as C=O, C-O, N-H, C-H and O-H were regarded as bond dipoles, but also nitrogens with lone-pair electrons of adenine, cytosine, and guanine were regarded as lone-pair dipoles. The parameters needed were first determined by treating model complexes. The model was subsequently applied to a series of nucleobase-and nucleoside-containing hydrogen-bonded complexes to rapidly predict the equilibrium hydrogen bond distances and the intermolecular interaction energies. It was observed that the model developed in this work reproduce the MP2/6-31+G(d,p) and B3LYP/6-31+G(d,p) equilibrium hydrogen bond distances with a root mean square error of less than 0.004 nm and the counterpoise-corrected MP2/aug-cc-pVTZ intermolecular interaction energies with a root mean square error of less than 2.93 kJ/mol, which was also highly efficient, demonstrating that the model developed in this work was reasonable and useful.

Key words: Nucleoside, Lone-pair dipole, Hydrogen bond, Interaction energy

HUANG Cuiying, HAO Qiang, WANG Changsheng. Rapid Prediction of Interaction Energies for Nucleoside-containing Hydrogen-bonded Complexes: Lone-pair Dipole Moment Treatment for Adenine, Cytosine and Guanine[J]. Chemical Research in Chinese Universities, 2017, 33(1): 94-99.

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