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高等学校化学研究 ›› 2003, Vol. 19 ›› Issue (1): 44-48.

• Articles • 上一篇    下一篇

A Generic and Dynamic Framework for Web Publishing of Bioinformatics Databases

SHI Yu-hua, WANG Yu-hong, LI Tian-yu, LI Wei   

  1. College of Life Science, Jilin University, Changchun 130023, P. R. China
  • 收稿日期:2001-12-11 出版日期:2003-01-24 发布日期:2011-08-06
  • 基金资助:

    Supported by the NSFC(No.39980005).

A Generic and Dynamic Framework for Web Publishing of Bioinformatics Databases

SHI Yu-hua, WANG Yu-hong, LI Tian-yu, LI Wei   

  1. College of Life Science, Jilin University, Changchun 130023, P. R. China
  • Received:2001-12-11 Online:2003-01-24 Published:2011-08-06
  • Supported by:

    Supported by the NSFC(No.39980005).

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摘要： The present paper covers a generic and dynamic framework for the web publishing of bioinformatics databases based upon a meta data design, Java Bean, Java Server Page(JSP), Extensible Markup Language(XML), Extensible Stylesheet Language(XSL) and Extensible Stylesheet Language Transformation(XSLT). In this framework, the content is stored in a configurable and structured XML format, dynamically generated from an Oracle Relational Database Management System(RDBMS). The presentation is dynamically generated by transforming the XML document into HTML through XSLT.This clean separation between content and presentation makes the web publishing more flexible; changing the presentation only needs a modification of the Extensive Stylesheet(XS).

关键词: Java Server Pages, XML, XSL, Oracle, Java, Bioinformatics

Abstract: The present paper covers a generic and dynamic framework for the web publishing of bioinformatics databases based upon a meta data design, Java Bean, Java Server Page(JSP), Extensible Markup Language(XML), Extensible Stylesheet Language(XSL) and Extensible Stylesheet Language Transformation(XSLT). In this framework, the content is stored in a configurable and structured XML format, dynamically generated from an Oracle Relational Database Management System(RDBMS). The presentation is dynamically generated by transforming the XML document into HTML through XSLT.This clean separation between content and presentation makes the web publishing more flexible; changing the presentation only needs a modification of the Extensive Stylesheet(XS).

Key words: Java Server Pages, XML, XSL, Oracle, Java, Bioinformatics